cellranger 10x genomics cell ranger 3.0.0 (10X Genomics)
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10X Genomics
cellranger 10x genomics cell ranger 3.0.0
Cellranger 10x Genomics Cell Ranger 3.0.0, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+3%2E0%2E0/cellranger++10x+genomics++version+3+1+0/pmc11459127__pnas__2406837121__sapp-258-14-15
Average 90 stars, based on 1 article reviews
Cellranger 10x Genomics Cell Ranger 3.0.0, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+3%2E0%2E0/cellranger++10x+genomics++version+3+1+0/pmc11459127__pnas__2406837121__sapp-258-14-15
Average 90 stars, based on 1 article reviews
cellranger 10x genomics cell ranger 3.0.0 - by Bioz Stars,
2026-10
90/100 stars
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Recombinant:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Virus:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Control:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Labeling:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Amplification:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Binding Assay:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Clone Assay:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Transfection:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Gel Extraction:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Nested PCR:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Sequencing:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Expressing:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Plasmid Preparation:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Software:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Transmission Assay:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Microscopy:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Purification:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Formalin-fixed Paraffin-Embedded:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Staining:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Conjugation Assay:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ RNAscope:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Multiplex Assay:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ Generated:Article Title: Targeting RSV-neutralizing B cell receptors with anti-idiotypic antibodies Article Snippet: Article Title: Astrocyte transcriptomic changes along the spatiotemporal progression of Alzheimer’s disease Article Snippet: Raw reads were processed using Article Title: Single-cell transcriptomic analysis of the identity and function of fibro/adipogenic progenitors in healthy and dystrophic muscle Article Snippet: Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model. Article Snippet: Article Title: Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers. Article Snippet: • PURPOSE: Ocular adnexal sebaceous carcinoma (OaSC) is an aggressive malignancy that often necessitates orbital exenteration.. Its tumor composition and transcriptional profile remain largely unknown, which poses a significant barrier to medical advances.. Here, we report the first in-depth transcriptomic analysis of OaSC at the single-cell resolution and discern mechanisms underlying cancer progression for the discovery of potential globe-sparing immunotherapies, targeted therapies, and biomarkers to guide clinical management. Article Title: Single Cell RNA Sequencing Analysis of Mouse Retina Identifies a Subpopulation of Muller Glia Involved in Retinal Recovery From Injury in the FCD-LIRD Model Article Snippet: Article Title: Pan-cancer single-cell dissection reveals phenotypically distinct B cell subtypes. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Purified antibodies Various See Table S7 for details Biological samples FFPE tissue samples National Human Genetic Resources Sharing Service Platform See Table S2A for details Fresh tissue samples Sun Yat-sen University Cancer Center See Table S6 for details Critical commercial assays Tumor Dissociation Kit, human Miltenyi Biotec Cat#130-095-929 eBioscience Foxp3 / Transcription Factor Staining Buffer Set Invitrogen Cat#00-5523-00 PanoPANEL Kits Panovue Cat#10234100050 PhenoCycler-Fusion Conjugation Kit Akoya Biosciences Cat#7000009 Deposited data Data files for human scRNA-seq dataset This study GEO: GSE233236 Raw data for human scRNA-seq dataset This study GSA for human: HRA000321 Public human cancer scRNA-seq datasets Various public studies See Table S1A for details SMART-seq2 scRNA-seq datasets Various public studies See Table S5A for details scRNA-seq datasets from non-cancer conditions Various public studies See Table S5B for details Human BCRA scATAC-seq dataset Zhang et al.51 GEO: GSE169246 Human melanoma anti-PD-1 treatment dataset Liu et al.115 dbGAP: phs000452.v3.p1 Human melanoma anti-CTLA-4 treatment dataset Van Allen et al.116 dbGaP: phs000452.v2.p1 Human melanoma adoptive cell transfer treatment dataset Lauss et al.117 GEO: GSE100797 Human lung cancer anti-PD-1 treatment dataset Cho et al.118 GEO: GSE126044 Human melanoma anti-PD-1 treatment dataset Gide et al.119 ENA: PRJEB23709 Human melanoma anti-CTLA-4 treatment dataset Auslander et al.120 GEO: GSE115821 Human lung cancer anti-PD-1 treatment dataset Prat et al.121 GEO: GSE93157 Human pan-cancer B cell scRNA-seq dataset Ma et al.109 http://pancancer.cn/B/ Software and algorithms ImageScope v12.4.3.5008 Leica Biosystems https://www.leicabiosystems.com/digital- pathology/manage/aperio-imagescope/ OlyVIA 3.3 OLYMPUS https://olyvia.software.informer.com/ HALO 3.5 Indica Labs https://www.indicalab.com/halo HighPlex FL 4.2.3 Indica Labs https://indicalab.com/products/high-plex- fl/ |